Publications
At a glance
Peer-reviewed, in review
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From collection trays to AI-ready data: an operational framework for automated entomological specimen processing.
Biodiversity Data Journal (in review).
2026
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A continental-scale dataset of ground beetles with high-resolution images and validated morphological trait measurements.
Nature Scientific Data.
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ForestForTrees: an R package to infer forest structure from remote sensing data.
Methods in Ecology and Evolution 17(7): 2052–2060.
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Comprehensive framework for assessing and optimizing existing research networks.
Conservation Biology e70202.
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Automatic image-level morphological trait annotation for organismal images.
International Conference on Learning Representations (ICLR), Rio de Janeiro, Brazil.
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BeetleFlow: an integrative deep learning pipeline for beetle image processing.
Preprint, arXiv:2511.00255 [cs.CV].
2025
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Optimizing image capture for computer vision-powered taxonomic identification and trait recognition of biodiversity specimens.
Methods in Ecology and Evolution 16(10): 2260–2275.
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Fine-grained beetle taxonomy with vision models: a benchmark on long-tailed and domain-adaptive classification.
IEEE/CVF International Conference on Computer Vision (ICCV), Honolulu, Hawaii, 5152–5158.
2024
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Validation and error minimization of GEDI data in the South American tropics.
Remote Sensing 16(19).
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Integrating ecological value and charismatic species habitats to prioritize habitats for conservation: a case study from Greater Yellowstone.
Natural Areas Journal 44: 157–171.
2023
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Measuring understory fire effects from space: canopy change in response to tropical understory fire and what this means for applications of GEDI for tropical fire.
Remote Sensing 15: 696.
2022
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Informing conservation decisions to target private lands of highest ecological value and risk of loss.
Ecological Applications.
2021
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Is whitebark pine less sensitive to climate warming when climate tolerances of juveniles are considered?
Forest Ecology and Management 493: 119221.
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Natural vegetation cover on private lands: locations and risk of loss in the northwestern United States.
Ecosphere 12.
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Towards monitoring ecosystem integrity within the Post-2020 Global Biodiversity Framework.
Conservation Letters e12822: 1–23.
Other publications
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Early-career publishing and reviewing: pitfalls and perspectives.
The Bulletin of the Ecological Society of America e70023.
Open data and protocols
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Sentinel Beetles.
Imageomics Institute, dataset on Hugging Face. Benchmark for the NSF HDR Machine Learning Challenge.
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Hawaii Beetles.
Imageomics Institute, dataset on Hugging Face. 1,614 images of 14 ground beetle species from the NEON Pu'u Maka'ala site, Hawai'i.
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Beetle Imaging Procedure: standard operating procedure for imaging pinned ground beetles at the NEON Biorepository.
Imageomics Institute, online protocol.